Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'9-Segment pdb2hgu1A.i1105-1115
Source: [PDB-id:chain] 2hgu:A (&rarr PDB)
Source: Information 70S T.TH. RIBOSOME FUNCTIONAL COMPLEX WITH MRNA AND E- AND P-SITE TRNAS AT 4.5A. THIS ENTRY 2HGU CONTAINS 50S RIBOSOMAL SUBUNIT. THE 30S RIBOSOMAL SUBUNIT CAN BE FOUND IN PDB ENTRY 2HGR.
Source: Compound 23S RRNA
Source: Resolution 4.51 ANGSTROMS.
Position (1105, 1115)
Primary structure ('_': anchors) _UUAAAGAGU_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		5: C4'-exo, 6: C4'-exo, 9: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		5: syn, 7: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 10 11 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 6 Bifurcated/Watson-Crick trans y
2 2 5 Bifurcated/O2' ?
3 2 6 Watson-Crick/Watson-Crick cis y
4 5 6 O2'/C ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters