Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'17-Hairpin pdb2hgu1A.e1737-1755
Source: [PDB-id:chain] 2hgu:A (&rarr PDB)
Source: Information 70S T.TH. RIBOSOME FUNCTIONAL COMPLEX WITH MRNA AND E- AND P-SITE TRNAS AT 4.5A. THIS ENTRY 2HGU CONTAINS 50S RIBOSOMAL SUBUNIT. THE 30S RIBOSOMAL SUBUNIT CAN BE FOUND IN PDB ENTRY 2HGR.
Source: Compound 23S RRNA
Source: Resolution 4.51 ANGSTROMS.
Position (1737, 1755)
Primary structure ('_': anchors) _UGGGGUGAUGAGCCCCG_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		2: C2'-exo, 5: C2'-exo, 7: C4'-exo, 12: C4'-exo, 18: C2'-exo, 19: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		9: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 3 18 →
3 6 7 ↑
4 7 10 &larr
5 18 19 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 19 Watson-Crick/Watson-Crick cis
2 3 4 Sugar/Bifurcated cis y
3 3 17 Watson-Crick/Watson-Crick cis
4 4 15 Bifurcated/Bifurcated cis y
5 4 17 Watson-Crick/Sugar cis y
6 5 15 Watson-Crick/Watson-Crick cis
7 8 9 Sugar/O2' ?
8 9 10 Watson-Crick/O2' ?
9 10 11 Sugar/O2' ?
10 12 13 Sugar/O2' ?
11 15 16 Hoogsteen/Watson-Crick cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters