Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'7-Hairpin pdb2hgr1C.e53-61
Source: [PDB-id:chain] 2hgr:C (&rarr PDB)
Source: Information 70S T.TH. RIBOSOME FUNCTIONAL COMPLEX WITH MRNA AND E- AND P-SITE TRNAS AT 4.5A. THIS ENTRY 2HGR CONTAINS 30S RIBOSOMAL SUBUNIT. THE 50S RIBOSOMAL SUBUNIT CAN BE FOUND IN PDB ENTRY 2HGU.
Source: Compound TRNA FMET (UNMODIFIED BASES)
Source: Resolution 4.51 ANGSTROMS.
Position (53, 61)
Primary structure ('_': anchors) _UUCAAAU_
Bases with unusual sugar puckers
(Standard: C3'-endo)
1: C4'-exo, 5: C2'-exo, 6: C2'-exo, 7: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3
3 4 5
4 6 9
5 7 8
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 Watson-Crick/Watson-Crick cis
2 2 6 Hoogsteen/Watson-Crick trans y
3 3 5 Hoogsteen/O2' ?
4 3 6 O2'/Watson-Crick ?
5 8 9 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters