Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'2-6-1-1-3-Multiloop pdb2hgr1A.m52-347
Source: [PDB-id:chain] 2hgr:A (&rarr PDB)
Source: Information 70S T.TH. RIBOSOME FUNCTIONAL COMPLEX WITH MRNA AND E- AND P-SITE TRNAS AT 4.5A. THIS ENTRY 2HGR CONTAINS 30S RIBOSOMAL SUBUNIT. THE 50S RIBOSOMAL SUBUNIT CAN BE FOUND IN PDB ENTRY 2HGU.
Source: Compound 16S RRNA
Source: Resolution 4.51 ANGSTROMS.
Position (54, 345), (57, 95), (102, 305), (307, 328), (330, 341)
Primary structure ('_': anchors) _AA_-_GGACGG_-_A_-_A_-_GCA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		1: C2'-exo, 3: C4'-exo, 6: C2'-exo, 7: C2'-exo, 14: C2'-exo, 20: C2'-exo, 21: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		7: syn, 8: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 23 →
2 4 6 →
3 9 10 ↑
4 11 12 ↑
5 12 14 →
6 15 17 →
7 16 17 ↑
8 17 18 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 23 Watson-Crick/Watson-Crick cis
2 3 6 O2'/Bifurcated trans y
3 3 10 Bifurcated/O2' ?
4 4 5 Watson-Crick/Watson-Crick cis
5 12 13 Watson-Crick/Watson-Crick cis
6 12 22 O2'/Sugar ?
7 13 22 Bifurcated/O2' ?
8 14 22 Bifurcated/O2' ?
9 15 16 Watson-Crick/Watson-Crick cis
10 17 20 Watson-Crick/Watson-Crick cis y
11 18 19 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters