Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'13-Segment pdb2hgq1A.i1621-1635
Source: [PDB-id:chain] 2hgq:A (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF THE 70S THERMUS THERMOPHILUS RIBOSOME WITH TRANSLOCATED AND ROTATED SHINE-DALGARNO DUPLEX. THIS ENTRY 2HGQ CONTAINS 50S RIBOSOMAL SUBUNIT. THE 30S RIBOSOMAL SUBUNIT CAN BE FOUND IN PDB ENTRY 2HGP.
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 5.50 ANGSTROMS.
Position (1621, 1635)
Primary structure ('_': anchors) _CCCGUACCGCAAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		2: C2'-exo, 6: C2'-exo, 7: O4'-endo, 8: C4'-exo, 11: C2'-exo, 12: C4'-exo, 14: O4'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		6: syn, 7: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 7 8 ↓
2 9 10 ↑
3 12 15 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 8 14 Bifurcated/O2' ?
2 9 10 Hoogsteen/O2' ?
3 9 14 Hoogsteen/O2' ?
4 10 12 Watson-Crick/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters