Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'7-Hairpin pdb2hgq1A.e410-418
Source: [PDB-id:chain] 2hgq:A (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF THE 70S THERMUS THERMOPHILUS RIBOSOME WITH TRANSLOCATED AND ROTATED SHINE-DALGARNO DUPLEX. THIS ENTRY 2HGQ CONTAINS 50S RIBOSOMAL SUBUNIT. THE 30S RIBOSOMAL SUBUNIT CAN BE FOUND IN PDB ENTRY 2HGP.
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 5.50 ANGSTROMS.
Position (410, 418)
Primary structure ('_': anchors) _UCGUGGA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		1: C4'-exo, 2: C2'-exo, 3: C2'-exo, 5: C2'-exo, 7: C2'-exo, 8: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases None
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 3 Bifurcated/O2' ?
2 1 9 Watson-Crick/Watson-Crick cis y
3 3 6 Bifurcated/O2' ?
4 3 8 Watson-Crick/O2' ?
5 5 6 C/O2' ?
6 6 8 Hoogsteen/O2' ?
7 8 9 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters