Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-7-Internal Loop pdb2hgpFA.n1110-1120
Source: [PDB-id:chain] 2hgp:A (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF THE 70S THERMUS THERMOPHILUS RIBOSOME WITH TRANSLOCATED AND ROTATED SHINE-DALGARNO DUPLEX. THIS ENTRY 2HGP CONTAINS 30S RIBOSOMAL SUBUNIT. THE 50S RIBOSOMAL SUBUNIT CAN BE FOUND IN PDB ENTRY 2HGQ.
Source: Compound 16S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 5.50 ANGSTROMS.
Position (1102, 1127), (1110, 1120)
Primary structure ('_': anchors) _GGCACU_-_UUGCCAG_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		6: C2'-exo, 8: C4'-exo, 16: C2'-exo, 17: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 3 4 ↑
2 4 11 →
3 5 17 &larr
4 12 13 ↑
5 13 14 ↑
6 14 15 ↑
7 14 17 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 17 Watson-Crick/Watson-Crick cis
2 2 3 Hoogsteen/Watson-Crick cis y
3 2 14 Watson-Crick/O2' ?
4 3 17 Hoogsteen/Watson-Crick trans y
5 4 13 Watson-Crick/O2' trans y
6 5 14 Watson-Crick/Watson-Crick cis
7 6 10 O2'/Bifurcated ?
8 7 12 Watson-Crick/Watson-Crick cis y
9 7 13 Watson-Crick/Watson-Crick cis y
10 8 9 Watson-Crick/Watson-Crick cis
11 10 12 Hoogsteen/O2' ?
12 11 12 Hoogsteen/O2' ?
13 11 13 Hoogsteen/O2' cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters