Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'4-Segment pdb2hgp1A.i1254-1259
Source: [PDB-id:chain] 2hgp:A (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF THE 70S THERMUS THERMOPHILUS RIBOSOME WITH TRANSLOCATED AND ROTATED SHINE-DALGARNO DUPLEX. THIS ENTRY 2HGP CONTAINS 30S RIBOSOMAL SUBUNIT. THE 50S RIBOSOMAL SUBUNIT CAN BE FOUND IN PDB ENTRY 2HGQ.
Source: Compound 16S RIBOSOMAL RNA
Source: Resolution 5.50 ANGSTROMS.
Position (1254, 1259)
Primary structure ('_': anchors) _UAAU_
Bases with unusual sugar puckers
(Standard: C3'-endo)
1: C4'-exo, 3: C4'-exo, 4: C4'-exo, 6: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases None
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 3 C/O2' ?
2 1 6 Watson-Crick/O2' ?
3 3 6 Bifurcated/O2' ?
4 5 6 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters