Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'8-5-Internal Loop pdb2hgjFA.n703-824
Source: [PDB-id:chain] 2hgj:A (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF THE 70S THERMUS THERMOPHILUS RIBOSOME SHOWING HOW THE 16S 3'-END MIMICKS MRNA E AND P CODONS. THIS ENTRY 2HGJ CONTAINS 50S RIBOSOMAL SUBUNIT. THE 30S RIBOSOMAL SUBUNIT CAN BE FOUND IN PDB ENTRY 2HGI.
Source: Compound 23S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 5.00 ANGSTROMS.
Position (697, 833), (703, 824)
Primary structure ('_': anchors) _AGAUAGCU_-_CGAAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		3: C2'-exo, 8: O4'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		4: syn, 13: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 5 6 ↑
2 5 15 &larr
3 6 7 ↑
4 7 12 →
5 11 12 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 17 Watson-Crick/Watson-Crick cis
2 3 4 Bifurcated/O2' ?
3 3 5 Watson-Crick/O2' ?
4 5 7 Bifurcated/O2' ?
5 5 14 Watson-Crick/O2' ?
6 5 15 O2'/Watson-Crick ?
7 6 14 Watson-Crick/Hoogsteen trans
8 10 11 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters