Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'2-3-Internal Loop pdb2hgjFA.n1222-1271
Source: [PDB-id:chain] 2hgj:A (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF THE 70S THERMUS THERMOPHILUS RIBOSOME SHOWING HOW THE 16S 3'-END MIMICKS MRNA E AND P CODONS. THIS ENTRY 2HGJ CONTAINS 50S RIBOSOMAL SUBUNIT. THE 30S RIBOSOMAL SUBUNIT CAN BE FOUND IN PDB ENTRY 2HGI.
Source: Compound 23S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 5.00 ANGSTROMS.
Position (1226, 1267), (1230, 1264)
Primary structure ('_': anchors) _AA_-_GAU_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		3: C2'-exo, 5: C2'-exo, 6: C4'-exo, 7: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		3: syn
Tertiary structure: Stacked bases None
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 Watson-Crick/Watson-Crick cis
2 2 7 Bifurcated/O2' ?
3 3 5 O2'/Bifurcated ?
4 3 9 Hoogsteen/Hoogsteen cis y
5 4 5 Watson-Crick/Watson-Crick cis
6 4 8 Watson-Crick/Watson-Crick trans y
7 5 6 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters