Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-4-Internal Loop pdb2hgj1B.n20-67
Source: [PDB-id:chain] 2hgj:B (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF THE 70S THERMUS THERMOPHILUS RIBOSOME SHOWING HOW THE 16S 3'-END MIMICKS MRNA E AND P CODONS. THIS ENTRY 2HGJ CONTAINS 50S RIBOSOMAL SUBUNIT. THE 30S RIBOSOMAL SUBUNIT CAN BE FOUND IN PDB ENTRY 2HGI.
Source: Compound 5S RIBOSOMAL RNA
Source: Resolution 5.00 ANGSTROMS.
Position (25, 62), (31, 57)
Primary structure ('_': anchors) _GAACC_-_GAAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		2: C2'-exo, 3: C4'-exo, 6: C2'-exo, 9: C2'-exo, 12: C2'-exo, 13: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 9 &larr
2 3 4 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 4 Bifurcated/O2' ?
2 1 13 Watson-Crick/Watson-Crick cis
3 5 9 Watson-Crick/Hoogsteen trans y
4 7 8 Watson-Crick/Watson-Crick cis
5 7 11 Watson-Crick/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters