Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-3-Internal Loop pdb2hgj1A.n1869-1882
Source: [PDB-id:chain] 2hgj:A (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF THE 70S THERMUS THERMOPHILUS RIBOSOME SHOWING HOW THE 16S 3'-END MIMICKS MRNA E AND P CODONS. THIS ENTRY 2HGJ CONTAINS 50S RIBOSOMAL SUBUNIT. THE 30S RIBOSOMAL SUBUNIT CAN BE FOUND IN PDB ENTRY 2HGI.
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 5.00 ANGSTROMS.
Position (1865, 1886), (1869, 1882)
Primary structure ('_': anchors) _GGA_-_GAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		7: C4'-exo, 8: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 3 7 &larr
2 4 5 ↑
3 6 7 ↑
4 9 10 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 2 Sugar/Hoogsteen trans y
2 1 10 Watson-Crick/Watson-Crick cis
3 2 3 Hoogsteen/C cis y
4 2 9 Bifurcated/O2' ?
5 4 7 O2'/Bifurcated ?
6 4 8 O2'/Watson-Crick ?
7 5 6 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters