Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'2-7-Internal Loop pdb2hgj1A.n1506-1531
Source: [PDB-id:chain] 2hgj:A (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF THE 70S THERMUS THERMOPHILUS RIBOSOME SHOWING HOW THE 16S 3'-END MIMICKS MRNA E AND P CODONS. THIS ENTRY 2HGJ CONTAINS 50S RIBOSOMAL SUBUNIT. THE 30S RIBOSOMAL SUBUNIT CAN BE FOUND IN PDB ENTRY 2HGI.
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 5.00 ANGSTROMS.
Position (1503, 1539), (1506, 1531)
Primary structure ('_': anchors) _GG_-_ACAAGCU_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		1: C4'-exo, 4: C2'-exo, 8: C4'-exo, 12: C2'-exo, 13: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		6: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 10 11 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 2 Sugar/Watson-Crick cis y
2 1 13 Watson-Crick/Watson-Crick cis
3 3 11 Watson-Crick/Watson-Crick cis
4 4 5 Watson-Crick/Watson-Crick cis
5 4 10 Bifurcated/O2' ?
6 5 6 Sugar/O2' ?
7 6 8 O2'/Hoogsteen ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters