Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'22-Segment pdb2hgj1A.i1105-1128
Source: [PDB-id:chain] 2hgj:A (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF THE 70S THERMUS THERMOPHILUS RIBOSOME SHOWING HOW THE 16S 3'-END MIMICKS MRNA E AND P CODONS. THIS ENTRY 2HGJ CONTAINS 50S RIBOSOMAL SUBUNIT. THE 30S RIBOSOMAL SUBUNIT CAN BE FOUND IN PDB ENTRY 2HGI.
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 5.00 ANGSTROMS.
Position (1105, 1128)
Primary structure ('_': anchors) _UUAAAGAGUGCGUAAUAGCUCA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		5: C4'-exo, 6: C4'-exo, 7: C2'-exo, 14: C2'-exo, 16: C4'-exo, 19: C2'-exo, 20: C2'-exo, 23: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		5: syn, 7: syn, 15: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 7 23 &larr
3 13 14 ↑
4 16 17 ↑
5 17 18 ↑
6 18 19 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 2 6 Watson-Crick/Watson-Crick cis
2 3 5 Hoogsteen/O2' ?
3 5 6 O2'/Sugar ?
4 7 22 Watson-Crick/Watson-Crick cis
5 9 23 Watson-Crick/O2' ?
6 12 19 Watson-Crick/Watson-Crick cis
7 13 18 Hoogsteen/Bifurcated trans y
8 14 17 Hoogsteen/Watson-Crick trans y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters