Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'13-Hairpin pdb2hgj1A.e1739-1753
Source: [PDB-id:chain] 2hgj:A (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF THE 70S THERMUS THERMOPHILUS RIBOSOME SHOWING HOW THE 16S 3'-END MIMICKS MRNA E AND P CODONS. THIS ENTRY 2HGJ CONTAINS 50S RIBOSOMAL SUBUNIT. THE 30S RIBOSOMAL SUBUNIT CAN BE FOUND IN PDB ENTRY 2HGI.
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 5.00 ANGSTROMS.
Position (1739, 1753)
Primary structure ('_': anchors) _GGGUGAUGAGCCC_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		4: C2'-exo, 9: C2'-exo, 12: C4'-exo, 13: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		7: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 4 5 ↑
2 6 7 →
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 2 Sugar/Watson-Crick cis y
2 1 15 Watson-Crick/Watson-Crick cis
3 2 13 Bifurcated/Bifurcated cis
4 3 12 Hoogsteen/Watson-Crick cis y
5 4 11 Hoogsteen/Watson-Crick cis y
6 6 11 Sugar/Watson-Crick trans y
7 7 8 Watson-Crick/O2' ?
8 7 9 Watson-Crick/Hoogsteen trans y
9 8 9 Sugar/O2' ?
10 9 10 O2'/Sugar ?
11 10 11 Hoogsteen/O2' ?
12 13 14 Hoogsteen/Watson-Crick cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters