Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'2-6-1-1-3-Multiloop pdb2hgi1A.m52-347
Source: [PDB-id:chain] 2hgi:A (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF THE 70S THERMUS THERMOPHILUS RIBOSOME SHOWING HOW THE 16S 3'-END MIMICKS MRNA E AND P CODONS. THIS ENTRY 2HGI CONTAINS 30S RIBOSOMAL SUBUNIT. THE 50S RIBOSOMAL SUBUNIT CAN BE FOUND IN PDB ENTRY 2HGJ.
Source: Compound 16S RRNA
Source: Resolution 5.00 ANGSTROMS.
Position (54, 345), (57, 95), (102, 305), (307, 328), (330, 341)
Primary structure ('_': anchors) _AA_-_GGACGG_-_A_-_A_-_GCA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		1: C2'-exo, 3: C4'-exo, 6: C2'-exo, 20: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		7: syn, 8: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 23 →
2 4 6 →
3 9 10 ↑
4 11 12 ↑
5 12 14 →
6 15 17 →
7 15 20 ↓
8 16 17 ↑
9 17 18 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 23 Watson-Crick/Watson-Crick cis
2 3 6 O2'/Bifurcated ?
3 3 10 Bifurcated/O2' ?
4 4 5 Watson-Crick/Watson-Crick cis
5 6 7 Bifurcated/O2' ?
6 11 14 Watson-Crick/Watson-Crick cis y
7 12 13 Watson-Crick/Watson-Crick cis
8 13 22 Watson-Crick/O2' ?
9 15 16 Watson-Crick/Watson-Crick cis
10 18 19 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters