Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-7-Internal Loop pdb2h0s1B.n75-113
Source: [PDB-id:chain] 2h0s:B (&rarr PDB)
Source: Information PRE-CLEAVAGE STATE OF THE THERMOANAEROBACTER TENGCONGENSIS GLMS RIBOZYME
Source: Compound GLMS RIBOZYME RNA
Source: Resolution 2.35 ANGSTROMS.
Position (79, 109), (86, 101)
Primary structure ('_': anchors) _GUAAAA_-_CAUAGAG_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		2: C3'-exo, 3: C3'-exo, 16: C3'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		3: unknown, 16: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 4 5 ↑
3 4 13 →
4 5 6 ↑
5 6 7 ↑
6 7 8 ↑
7 7 11 →
8 9 10 ↑
9 11 12 ↑
10 13 14 ↑
11 14 15 ↑
12 15 17 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 17 Watson-Crick/Watson-Crick cis
2 2 15 O2'/Bifurcated ?
3 5 12 Watson-Crick/Hoogsteen trans
4 6 10 Bifurcated/O2' ?
5 6 11 Watson-Crick/Hoogsteen trans
6 7 8 Bifurcated/O2' ?
7 7 10 Watson-Crick/Hoogsteen trans y
8 8 9 Watson-Crick/Watson-Crick cis
9 15 16 Sugar/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters