Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'1-3-Internal Loop pdb2gycF0.n2538-2585
Source: [PDB-id:chain] 2gyc:0 (&rarr PDB)
Source: Information STRUCTURE OF THE 50S SUBUNIT OF A SECM-STALLED E. COLI RIBOSOME COMPLEX OBTAINED BY FITTING ATOMIC MODELS FOR RNA AND PROTEIN COMPONENTS INTO CRYO-EM MAP EMD-1143
Source: Compound 23S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 2.00 ANGSTROMS.
Position (2539, 2584), (2543, 2582)
Primary structure ('_': anchors) _A_-_CAC_
Bases with unusual sugar puckers
(Standard: C3'-endo)
7: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 3
2 1 7
3 4 5
4 5 6
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 5 Sugar/Watson-Crick cis y
2 1 8 Watson-Crick/Watson-Crick cis
3 2 3 Hoogsteen/O2' ?
4 3 4 Watson-Crick/Watson-Crick cis
5 3 7 Hoogsteen/Watson-Crick trans
6 5 7 Hoogsteen/Sugar cis y
7 6 7 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters