Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'2-4-12-8-Multiloop pdb2gyc10.m2499-2630
Source: [PDB-id:chain] 2gyc:0 (&rarr PDB)
Source: Information STRUCTURE OF THE 50S SUBUNIT OF A SECM-STALLED E. COLI RIBOSOME COMPLEX OBTAINED BY FITTING ATOMIC MODELS FOR RNA AND PROTEIN COMPONENTS INTO CRYO-EM MAP EMD-1143
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 2.00 ANGSTROMS.
Position (2502, 2627), (2505, 2533), (2538, 2585), (2598, 2618)
Primary structure ('_': anchors) _GG_-_ACGC_-_GCGGAGAGAUAA_-_GAAACUUG_
Bases with unusual sugar puckers
(Standard: C3'-endo)
None
Bases with unusual glycosidic-bond configuration
(Standard: anti)
15: syn, 28: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 3 4
2 6 7
3 7 8
4 10 12
5 12 13
6 15 16
7 16 17
8 17 18
9 18 19
10 19 20
11 20 21
12 22 23
13 22 27
14 23 24
15 25 26
16 27 29
17 29 30
18 30 31
19 31 32
20 32 33
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 34 Watson-Crick/Watson-Crick cis
2 2 7 O2'/Watson-Crick ?
3 4 5 Watson-Crick/Watson-Crick cis y
4 10 11 Watson-Crick/Watson-Crick cis
5 19 30 Watson-Crick/Watson-Crick cis
6 20 29 Watson-Crick/Watson-Crick cis y
7 21 27 Hoogsteen/Watson-Crick trans
8 22 26 Watson-Crick/O2' ?
9 23 26 O2'/Bifurcated trans
10 24 25 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters