Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'22-Segment pdb2gyc10.i2630-2653
Source: [PDB-id:chain] 2gyc:0 (&rarr PDB)
Source: Information STRUCTURE OF THE 50S SUBUNIT OF A SECM-STALLED E. COLI RIBOSOME COMPLEX OBTAINED BY FITTING ATOMIC MODELS FOR RNA AND PROTEIN COMPONENTS INTO CRYO-EM MAP EMD-1143
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 2.00 ANGSTROMS.
Position (2630, 2653)
Primary structure ('_': anchors) _GAGAUGAGUUCUCCCGAAGGAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 3 5 ↓
3 3 9 ↑
4 9 10 ↑
5 10 11 ↑
6 11 12 ↑
7 12 13 ↑
8 13 14 ↑
9 20 21 ↑
10 21 22 ↑
11 22 23 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 14 19 Sugar/O2' ?
2 14 20 Sugar/O2' ?
3 15 19 Watson-Crick/O2' ?
4 16 18 Sugar/O2' ?
5 16 19 Bifurcated/O2' ?
6 17 18 C/O2' ?
7 18 19 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters