Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'24-Segment pdb2gyc10.i1446-1471
Source: [PDB-id:chain] 2gyc:0 (&rarr PDB)
Source: Information STRUCTURE OF THE 50S SUBUNIT OF A SECM-STALLED E. COLI RIBOSOME COMPLEX OBTAINED BY FITTING ATOMIC MODELS FOR RNA AND PROTEIN COMPONENTS INTO CRYO-EM MAP EMD-1143
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 2.00 ANGSTROMS.
Position (1446, 1471)
Primary structure ('_': anchors) _CGGGAGCUUCCUCGGAAGCGAAGU_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		17: C2'-exo, 18: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 3 4 ↑
3 5 6 ↑
4 5 22 →
5 6 7 ↑
6 7 8 ↑
7 8 9 ↑
8 11 12 ↑
9 14 15 ↑
10 15 16 ↑
11 17 18 ↑
12 19 20 ↑
13 22 23 ↑
14 23 24 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 4 22 O2'/Watson-Crick ?
2 8 19 Watson-Crick/Watson-Crick cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters