Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'17-Hairpin pdb2gyc10.e2328-2346
Source: [PDB-id:chain] 2gyc:0 (&rarr PDB)
Source: Information STRUCTURE OF THE 50S SUBUNIT OF A SECM-STALLED E. COLI RIBOSOME COMPLEX OBTAINED BY FITTING ATOMIC MODELS FOR RNA AND PROTEIN COMPONENTS INTO CRYO-EM MAP EMD-1143
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 2.00 ANGSTROMS.
Position (2328, 2346)
Primary structure ('_': anchors) _CAAGAGUUCAUAUCGAC_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 3 16 &larr
4 4 5 ↑
5 4 17 →
6 5 6 ↑
7 6 7 ↑
8 7 10 &larr
9 8 9 ↑
10 9 10 ↑
11 11 12 ↑
12 15 16 ↑
13 17 18 ↑
14 18 19 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 19 Watson-Crick/Watson-Crick cis
2 3 11 Bifurcated/O2' ?
3 3 17 Hoogsteen/Sugar trans y
4 4 11 C/O2' ?
5 4 16 O2'/Bifurcated trans y
6 6 11 O2'/Bifurcated ?
7 6 14 Hoogsteen/Bifurcated trans y
8 7 12 O2'/Bifurcated ?
9 8 10 Bifurcated/O2' ?
10 10 13 Watson-Crick/Watson-Crick cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters