Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'4-3-Internal Loop pdb2gyb1A.n625-712
Source: [PDB-id:chain] 2gyb:A (&rarr PDB)
Source: Information STRUCTURE OF THE 30S SUBUNIT OF A SECM-STALLED E. COLI RIBOSOME COMPLEX OBTAINED BY FITTING ATOMIC MODELS FOR RNA AND PROTEIN COMPONENTS INTO CRYO-EM MAP EMD-1143
Source: Compound 16S RIBOSOMAL RNA
Source: Resolution 2.00 ANGSTROMS.
Position (627, 710), (632, 706)
Primary structure ('_': anchors) _UAGA_-_GGA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
None
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 3 4
3 6 8
4 8 9
5 9 10
6 10 11
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 11 Watson-Crick/Watson-Crick cis
2 3 9 Watson-Crick/Watson-Crick cis y
3 6 7 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters