Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'29-Segment pdb2gyb1A.i915-945
Source: [PDB-id:chain] 2gyb:A (&rarr PDB)
Source: Information STRUCTURE OF THE 30S SUBUNIT OF A SECM-STALLED E. COLI RIBOSOME COMPLEX OBTAINED BY FITTING ATOMIC MODELS FOR RNA AND PROTEIN COMPONENTS INTO CRYO-EM MAP EMD-1143
Source: Compound 16S RIBOSOMAL RNA
Source: Resolution 2.00 ANGSTROMS.
Position (915, 945)
Primary structure ('_': anchors) _UUAAUUCGAUGCAACGCGAAGAACCUUAC_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		22: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 4 5 ↑
4 7 8 ↑
5 7 29 →
6 8 9 ↑
7 9 10 ↑
8 9 19 →
9 12 13 ↑
10 15 16 ↑
11 27 28 &larr
12 30 31 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 3 5 O2'/Hoogsteen ?
2 9 18 Watson-Crick/Watson-Crick cis
3 11 15 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters