Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'22-Segment pdb2gya10.i1731-1754
Source: [PDB-id:chain] 2gya:0 (&rarr PDB)
Source: Information STRUCTURE OF THE 50S SUBUNIT OF A PRE-TRANSLOCATIONAL E. COLI RIBOSOME OBTAINED BY FITTING ATOMIC MODELS FOR RNA AND PROTEIN COMPONENTS INTO CRYO-EM MAP EMD-1056
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 2.00 ANGSTROMS.
Position (1731, 1754)
Primary structure ('_': anchors) _UGCCCGGUGCCGGAAGGUUAAU_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 3 4 ↑
3 7 8 ↑
4 8 9 ↑
5 9 10 ↑
6 10 11 ↑
7 13 14 ↑
8 14 15 ↑
9 16 17 ↑
10 17 18 ↑
11 18 19 ↑
12 19 20 ↑
13 21 22 ↑
14 22 23 ↑
15 23 24 ↑
Tertiary structure: Base-pairs
(anchor pairs) 		None
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters