Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'24-Segment pdb2gya10.i1485-1510
Source: [PDB-id:chain] 2gya:0 (&rarr PDB)
Source: Information STRUCTURE OF THE 50S SUBUNIT OF A PRE-TRANSLOCATIONAL E. COLI RIBOSOME OBTAINED BY FITTING ATOMIC MODELS FOR RNA AND PROTEIN COMPONENTS INTO CRYO-EM MAP EMD-1056
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 2.00 ANGSTROMS.
Position (1485, 1510)
Primary structure ('_': anchors) _CAGGAAAAGCUUCUAAACGUUGAA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
14: C4'-exo, 15: C4'-exo, 16: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 6 7
2 7 8
3 8 9
4 9 10
5 10 11
6 12 13
7 13 14
8 17 18
9 24 25
10 25 26
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 2 3 Hoogsteen/O2' ?
2 4 5 Hoogsteen/O2' ?
3 22 23 Hoogsteen/O2' ?
4 23 24 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters