Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-Hairpin pdb2gvo1A.e6-13
Source: [PDB-id:chain] 2gvo:A (&rarr PDB)
Source: Information SOLUTION STRUCTURE OF A PURINE RICH HEXALOOP HAIRPIN BELONGING TO PGY/MDR1 MRNA AND TARGETED BY ANTISENSE OLIGONUCLEOTIDES
Source: Compound GUANOSINE-5'-MONOPHOSPHATE
Source: Resolution NOT APPLICABLE.
Position (6, 13)
Primary structure ('_': anchors) _GGGAUG_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		1: C4'-exo, 2: C2'-exo, 3: C2'-endo, 4: C2'-endo, 5: C2'-endo, 6: C2'-endo, 7: C2'-endo, 8: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		3: syn, 4: syn, 5: syn, 7: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 3 4 ↑
4 4 5 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 8 Watson-Crick/Watson-Crick cis
2 3 4 Hoogsteen/O2' ?
3 4 5 Hoogsteen/O2' ?
4 5 7 Watson-Crick/Sugar cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters