Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-4-Internal Loop pdb2gio1A.n1-29
Source: [PDB-id:chain] 2gio:A (&rarr PDB)
Source: Information SOLUTION STRUCTURE OF A PORTION OF THE 5'UTR OF HSPA MRNA OF BRADYRHIZOBIUM JAPONICUM
Source: Compound 29-MER
Source: Resolution NOT APPLICABLE.
Position (5, 25), (11, 20)
Primary structure ('_': anchors) _UCUUG_-_GAUU_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		4: C2'-exo, 10: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		6: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 4 5 ↑
3 5 6 &larr
4 6 7 →
5 8 9 ↑
6 9 10 ↑
7 10 11 ↑
8 12 13 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 13 Watson-Crick/Watson-Crick cis
2 2 12 Watson-Crick/Watson-Crick cis
3 3 11 Watson-Crick/Watson-Crick cis y
4 4 11 Watson-Crick/Watson-Crick cis
5 5 10 Watson-Crick/Watson-Crick cis
6 6 9 Watson-Crick/Hoogsteen cis
7 7 8 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters