Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'7-Hairpin pdb2gcs1B.e56-64
Source: [PDB-id:chain] 2gcs:B (&rarr PDB)
Source: Information PRE-CLEAVAGE STATE OF THE THERMOANAEROBACTER TENGCONGENSIS GLMS RIBOZYME
Source: Compound GLMS RIBOZYME RNA
Source: Resolution 2.10 ANGSTROMS.
Position (56, 64)
Primary structure ('_': anchors) _UUCCUGC_
Bases with unusual sugar puckers
(Standard: C3'-endo)
2: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 4 5
2 5 6
3 6 7
4 7 8
5 8 9
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 Watson-Crick/Watson-Crick cis
2 2 4 Hoogsteen/Watson-Crick cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters