Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-6-Internal Loop pdb2feyFA.n1-43
Source: [PDB-id:chain] 2fey:A (&rarr PDB)
Source: Information THE STRUCTURE OF STEM LOOP IV OF TETRAHYMENA TELOMERASE RNA
Source: Compound STEM-LOOP IV OF TETRAHYMENA TELOMERASE RNA
FLIPPED INTERNAL
Source: Resolution NOT APPLICABLE.
Position (5, 39), (12, 35)
Primary structure ('_': anchors) _GAU_-_UAUCGA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
1: C2'-exo, 2: C1'-exo, 3: C3'-exo, 4: C2'-exo, 7: O4'-endo, 8: C2'-endo, 10: C3'-exo, 11: C3'-exo, 12: O4'-endo, 13: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 12 13
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 13 Watson-Crick/Watson-Crick cis
2 4 9 Watson-Crick/Watson-Crick cis
3 5 6 Watson-Crick/Watson-Crick cis
4 11 12 C/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters