Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'7-Hairpin pdb2fey1A.e20-28
Source: [PDB-id:chain] 2fey:A (&rarr PDB)
Source: Information THE STRUCTURE OF STEM LOOP IV OF TETRAHYMENA TELOMERASE RNA
Source: Compound STEM-LOOP IV OF TETRAHYMENA TELOMERASE RNA
Source: Resolution NOT APPLICABLE.
Position (20, 28)
Primary structure ('_': anchors) _CACUAUU_
Bases with unusual sugar puckers
(Standard: C3'-endo)
1: O4'-endo, 3: C1'-endo, 5: C2'-endo, 6: C2'-endo, 7: C3'-exo, 8: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3
3 3 4
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 Watson-Crick/Watson-Crick cis
2 2 8 Watson-Crick/Watson-Crick cis y
3 3 6 Watson-Crick/O2' ?
4 4 7 Hoogsteen/Sugar cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters