Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'4-3-Internal Loop pdb2fdt1A.n11-27
Source: [PDB-id:chain] 2fdt:A (&rarr PDB)
Source: Information SOLUTION STRUCTURE OF A CONSERVED RNA HAIRPIN OF EEL LINE UNAL2
Source: Compound 36-MER
Source: Resolution NOT APPLICABLE.
Position (6, 31), (11, 27)
Primary structure ('_': anchors) _ACGU_-_UCU_
Bases with unusual sugar puckers
(Standard: C3'-endo)
3: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 4
2 2 11
3 4 5
4 5 6
5 7 8
6 8 9
7 9 10
8 10 11
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 11 Watson-Crick/Watson-Crick cis
2 4 9 Watson-Crick/Watson-Crick cis
3 5 8 Watson-Crick/Watson-Crick cis
4 6 7 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters