Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'9-Hairpin pdb2f4x1B.e8-18
Source: [PDB-id:chain] 2f4x:B (&rarr PDB)
Source: Information NMR SOLUTION OF HIV-1 LAI KISSING COMPLEX
Source: Compound 5'-
Source: Resolution NOT APPLICABLE.
Position (8, 18)
Primary structure ('_': anchors) _AAGCGCGCA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
2: C2'-endo, 3: C3'-exo, 6: C2'-exo, 10: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
2: syn, 3: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 4 5
2 6 7
3 7 8
4 8 9
5 9 10
6 10 11
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 2 Hoogsteen/O2' ?
2 1 11 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters