Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-5-Internal Loop pdb2f4vFA.n1382-1470
Source: [PDB-id:chain] 2f4v:A (&rarr PDB)
Source: Information 30S RIBOSOME + DESIGNER ANTIBIOTIC
Source: Compound 16S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 3.80 ANGSTROMS.
Position (1383, 1469), (1389, 1462)
Primary structure ('_': anchors) _CGAAGU_-_UCACG_
Bases with unusual sugar puckers
(Standard: C3'-endo)
5: C4'-exo, 6: C1'-endo, 9: C2'-exo, 10: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3
2 3 12
3 4 5
4 6 10
5 7 8
6 9 10
7 11 12
8 13 14
9 14 15
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 15 Watson-Crick/Watson-Crick cis
2 2 14 Watson-Crick/Watson-Crick cis
3 3 13 Watson-Crick/Watson-Crick cis y
4 6 11 Watson-Crick/Watson-Crick cis
5 8 9 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters