Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-5-Internal Loop pdb2f4v1A.n1406-1445
Source: [PDB-id:chain] 2f4v:A (&rarr PDB)
Source: Information 30S RIBOSOME + DESIGNER ANTIBIOTIC
Source: Compound 16S RIBOSOMAL RNA
Source: Resolution 3.80 ANGSTROMS.
Position (1409, 1442), (1416, 1436)
Primary structure ('_': anchors) _GAAGUC_-_GCCGA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
2: C2'-exo, 11: C2'-exo, 14: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 3 4
3 3 14
4 4 5
5 6 7
6 7 8
7 9 10
8 10 11
9 11 12
10 12 13
11 14 15
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 15 Watson-Crick/Watson-Crick cis
2 2 14 Bifurcated/O2' ?
3 3 13 Bifurcated/O2' ?
4 5 12 Watson-Crick/Watson-Crick cis
5 8 9 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters