Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'2-2-6-8-2-Multiloop pdb2f4v1A.m28-531
Source: [PDB-id:chain] 2f4v:A (&rarr PDB)
Source: Information 30S RIBOSOME + DESIGNER ANTIBIOTIC
Source: Compound 16S RIBOSOMAL RNA
Source: Resolution 3.80 ANGSTROMS.
Position (32, 527), (35, 394), (397, 427), (434, 470), (479, 524)
Primary structure ('_': anchors) _UG_-_UU_-_UGAACC_-_GGGUAAUA_-_GA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		8: C2'-exo, 10: C2'-exo, 11: C4'-exo, 12: C4'-exo, 13: C2'-exo, 18: C2'-exo, 22: C3'-exo, 23: C4'-exo, 25: C2'-endo, 29: C3'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		29: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 4 6 →
2 4 24 →
3 8 22 ↓
4 10 11 ↑
5 12 23 →
6 13 14 ↑
7 13 21 →
8 14 15 ↑
9 17 18 ↑
10 18 19 ↑
11 19 20 ↑
12 22 23 ↓
13 25 29 →
14 27 28 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 30 Watson-Crick/Watson-Crick cis
2 2 29 Watson-Crick/O2' ?
3 4 5 Watson-Crick/Watson-Crick cis
4 6 24 Hoogsteen/Watson-Crick cis y
5 8 9 Watson-Crick/Watson-Crick cis
6 11 22 O2'/Watson-Crick ?
7 11 23 Hoogsteen/Sugar trans y
8 12 21 Watson-Crick/Hoogsteen trans y
9 12 23 O2'/Bifurcated ?
10 13 14 Bifurcated/O2' ?
11 13 20 Sugar/Hoogsteen trans y
12 14 19 Watson-Crick/Watson-Crick cis y
13 16 17 Watson-Crick/Watson-Crick cis y
14 24 29 Hoogsteen/Watson-Crick trans y
15 26 27 Watson-Crick/Watson-Crick cis
16 26 30 O2'/Bifurcated ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters