Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'14-Segment pdb2f4v1A.i839-854
Source: [PDB-id:chain] 2f4v:A (&rarr PDB)
Source: Information 30S RIBOSOME + DESIGNER ANTIBIOTIC
Source: Compound 16S RIBOSOMAL RNA
Source: Resolution 3.80 ANGSTROMS.
Position (839, 854)
Primary structure ('_': anchors) _GCGUUAAGCGCGCC_
Bases with unusual sugar puckers
(Standard: C3'-endo)
1: C2'-exo, 2: C2'-exo, 5: C1'-exo, 6: C1'-exo, 7: C1'-exo, 8: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
7: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3
3 3 4
4 7 9
5 9 10
6 10 11
7 11 12
8 12 13
9 13 14
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 2 8 Watson-Crick/O2' ?
2 4 7 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters