Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'11-Segment pdb2f4v1A.i1273-1285
Source: [PDB-id:chain] 2f4v:A (&rarr PDB)
Source: Information 30S RIBOSOME + DESIGNER ANTIBIOTIC
Source: Compound 16S RIBOSOMAL RNA
Source: Resolution 3.80 ANGSTROMS.
Position (1273, 1285)
Primary structure ('_': anchors) _CCAGUUCGGAU_
Bases with unusual sugar puckers
(Standard: C3'-endo)
2: C1'-exo, 3: C2'-endo, 4: O4'-endo, 5: C2'-endo, 6: O4'-endo, 7: C2'-endo, 9: C2'-exo, 12: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
4: syn, 5: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 4 6
2 6 8
3 8 9
4 9 10
5 11 12
6 12 13
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 5 6 Hoogsteen/Sugar cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters