Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'4-Hairpin pdb2evy1A.e5-10
Source: [PDB-id:chain] 2evy:A (&rarr PDB)
Source: Information GNYA TETRANUCLEOTIDE LOOPS FOUND IN POLIOVIRUS ORIL BY IN VIVO SELEX (UN)EXPECTEDLY FORM A YNMG-LIKE STRUCTURE
Source: Compound POLIOVIRUS 5'NTR CLOVERLEAF STEM LOOP D MUTANT
Source: Resolution NOT APPLICABLE.
Position (5, 10)
Primary structure ('_': anchors) _GCUA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		2: C2'-exo, 4: C2'-endo, 5: O4'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 4 5 ↓
2 5 6 →
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 6 Watson-Crick/Watson-Crick cis y
2 2 5 Bifurcated/Sugar cis y
3 5 6 C/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters