Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-5-Internal Loop pdb2euyFA.n1-34
Source: [PDB-id:chain] 2euy:A (&rarr PDB)
Source: Information SOLUTION STRUCTURE OF THE INTERNAL LOOP OF HUMAN U65 H/ACA SNORNA 3' HAIRPIN
Source: Compound U65 BOX H/ACA SNORNA
FLIPPED INTERNAL
Source: Resolution NOT APPLICABLE.
Position (6, 29), (12, 23)
Primary structure ('_': anchors) _GCCGA_-_AGGAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		1: C4'-exo, 3: C4'-exo, 4: C4'-exo, 5: C4'-exo, 10: O4'-endo, 11: C2'-exo, 12: C2'-endo, 14: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 5 6 ↑
2 6 7 ↑
3 8 9 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 14 Watson-Crick/Watson-Crick cis
2 2 3 Hoogsteen/O2' ?
3 3 5 Watson-Crick/O2' ?
4 4 11 Watson-Crick/Watson-Crick cis
5 5 10 Watson-Crick/Watson-Crick cis y
6 6 9 Watson-Crick/Watson-Crick cis
7 7 8 Watson-Crick/Watson-Crick cis
8 9 10 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters