Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-5-Internal Loop pdb2euy1A.n12-23
Source: [PDB-id:chain] 2euy:A (&rarr PDB)
Source: Information SOLUTION STRUCTURE OF THE INTERNAL LOOP OF HUMAN U65 H/ACA SNORNA 3' HAIRPIN
Source: Compound U65 BOX H/ACA SNORNA
Source: Resolution NOT APPLICABLE.
Position (6, 29), (12, 23)
Primary structure ('_': anchors) _AGGAA_-_GCCGA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		1: C4'-exo, 3: C2'-endo, 4: C2'-exo, 5: O4'-endo, 10: C4'-exo, 11: C4'-exo, 12: C4'-exo, 14: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 6 7 ↑
2 8 9 ↑
3 9 10 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 14 Watson-Crick/Watson-Crick cis
2 4 11 Watson-Crick/Watson-Crick cis
3 5 6 Hoogsteen/O2' ?
4 5 10 Watson-Crick/Watson-Crick cis y
5 6 9 Watson-Crick/Watson-Crick cis
6 7 8 Watson-Crick/Watson-Crick cis
7 10 12 Watson-Crick/O2' ?
8 12 13 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters