Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-5-Internal Loop pdb2e5lFA.n369-378
Source: [PDB-id:chain] 2e5l:A (&rarr PDB)
Source: Information A SNAPSHOT OF THE 30S RIBOSOMAL SUBUNIT CAPTURING MRNA VIA THE SHINE- DALGARNO INTERACTION
Source: Compound 16S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 3.30 ANGSTROMS.
Position (363, 382), (369, 378)
Primary structure ('_': anchors) _UGA_-_CAAUG_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		2: C2'-exo, 3: C4'-exo, 10: C2'-exo, 11: O4'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 7 →
2 6 7 ↑
3 8 9 ↑
4 9 10 ↑
5 11 12 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 O2'/Watson-Crick cis y
2 1 12 Watson-Crick/Watson-Crick cis
3 2 8 Watson-Crick/Watson-Crick cis
4 2 11 Hoogsteen/Watson-Crick trans y
5 3 11 O2'/Bifurcated ?
6 5 6 Watson-Crick/Watson-Crick cis
7 10 12 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters