Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'2-6-1-1-3-Multiloop pdb2e5l1A.m53-348
Source: [PDB-id:chain] 2e5l:A (&rarr PDB)
Source: Information A SNAPSHOT OF THE 30S RIBOSOMAL SUBUNIT CAPTURING MRNA VIA THE SHINE- DALGARNO INTERACTION
Source: Compound 16S RIBOSOMAL RNA
Source: Resolution 3.30 ANGSTROMS.
Position (55, 346), (58, 96), (103, 306), (308, 329), (331, 342)
Primary structure ('_': anchors) _AA_-_GGACGG_-_A_-_A_-_GCA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		3: C4'-exo, 6: C2'-exo, 8: O4'-endo, 14: C4'-exo, 21: C2'-exo, 22: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		7: syn, 8: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 23 →
2 4 6 →
3 5 6 ↑
4 9 10 ↑
5 10 11 ↑
6 11 12 ↑
7 12 14 →
8 15 17 →
9 15 20 ↓
10 17 18 ↑
11 19 20 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 23 Watson-Crick/Watson-Crick cis
2 3 6 O2'/Watson-Crick trans
3 4 5 Watson-Crick/Watson-Crick cis
4 11 14 Watson-Crick/Watson-Crick cis
5 12 13 Watson-Crick/Watson-Crick cis
6 12 22 O2'/Sugar cis y
7 15 16 Watson-Crick/Watson-Crick cis
8 18 19 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters