Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'7-Hairpin pdb2du51D.e52-60
Source: [PDB-id:chain] 2du5:D (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF ARCHAEOGLOBUS FULGIDUS O-PHOSPHOSERYL- TRNA SYNTHETASE E418N/E420N MUTANT COMPLEXED WITH TRNAOPAL AND O-PHOSPHOSERINE ("OPAL COMPLEX")
Source: Compound TRNA
Source: Resolution 3.20 ANGSTROMS.
Position (52, 60)
Primary structure ('_': anchors) _UUCGAAU_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 4 5 ↑
4 6 9 ↑
5 7 8 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 Watson-Crick/Watson-Crick cis
2 2 6 Bifurcated/Watson-Crick trans y
3 3 5 O2'/Hoogsteen ?
4 3 6 O2'/Watson-Crick ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters