Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'9-Hairpin pdb2du31D.e12-22
Source: [PDB-id:chain] 2du3:D (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF ARCHAEOGLOBUS FULGIDUS O-PHOSPHOSERYL- TRNA SYNTHETASE COMPLEXED WITH TRNACYS AND O-PHOSPHOSERINE
Source: Compound TRNA
Source: Resolution 2.60 ANGSTROMS.
Position (12, 22)
Primary structure ('_': anchors) _GAGGGGCUU_
Bases with unusual sugar puckers
(Standard: C3'-endo)
None
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 3 4
3 3 10
4 4 5
5 8 9
6 10 11
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 11 Watson-Crick/Watson-Crick cis
2 7 8 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters