Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'7-Hairpin pdb2der1D.e51-59
Source: [PDB-id:chain] 2der:D (&rarr PDB)
Source: Information COCRYSTAL STRUCTURE OF AN RNA SULFURATION ENZYME MNMA AND TRNA-GLU IN THE INITIAL TRNA BINDING STATE
Source: Compound TRNA
Source: Resolution 3.10 ANGSTROMS.
Position (51, 59)
Primary structure ('_': anchors) _UUCGAAU_
Bases with unusual sugar puckers
(Standard: C3'-endo)
3: C2'-exo, 5: C2'-exo, 8: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3
3 4 5
4 6 9
5 7 8
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 Watson-Crick/Watson-Crick cis
2 2 6 Hoogsteen/Watson-Crick trans
3 3 6 O2'/Watson-Crick ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters