Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'9-Hairpin pdb2der1C.e13-23
Source: [PDB-id:chain] 2der:C (&rarr PDB)
Source: Information COCRYSTAL STRUCTURE OF AN RNA SULFURATION ENZYME MNMA AND TRNA-GLU IN THE INITIAL TRNA BINDING STATE
Source: Compound TRNA
Source: Resolution 3.10 ANGSTROMS.
Position (13, 23)
Primary structure ('_': anchors) _AGAGGCCCA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
4: C4'-exo, 6: C4'-exo, 8: C4'-exo, 10: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3
2 2 11
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 11 Watson-Crick/Watson-Crick cis
2 2 10 O2'/Watson-Crick cis y
3 3 8 Bifurcated/O2' trans
4 6 7 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters