Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-4-Internal Loop pdb2d3oF0.n816-870
Source: [PDB-id:chain] 2d3o:0 (&rarr PDB)
Source: Information STRUCTURE OF RIBOSOME BINDING DOMAIN OF THE TRIGGER FACTOR ON THE 50S RIBOSOMAL SUBUNIT FROM D. RADIODURANS
Source: Compound 23S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 3.35 ANGSTROMS.
Position (821, 865), (826, 859)
Primary structure ('_': anchors) _CCGAA_-_GUAG_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		3: C2'-exo, 10: C2'-exo, 13: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		2: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 3 10 →
2 4 5 ↑
3 8 9 ↑
4 9 10 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 13 Watson-Crick/Watson-Crick cis y
2 2 11 Watson-Crick/Watson-Crick cis y
3 4 10 Sugar/Hoogsteen trans
4 4 11 Watson-Crick/O2' ?
5 4 12 O2'/Bifurcated ?
6 5 9 Watson-Crick/Watson-Crick cis
7 7 8 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters