Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-8-Internal Loop pdb2d3oF0.n1769-1814
Source: [PDB-id:chain] 2d3o:0 (&rarr PDB)
Source: Information STRUCTURE OF RIBOSOME BINDING DOMAIN OF THE TRIGGER FACTOR ON THE 50S RIBOSOMAL SUBUNIT FROM D. RADIODURANS
Source: Compound 23S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 3.35 ANGSTROMS.
Position (1772, 1811), (1781, 1804)
Primary structure ('_': anchors) _GAAGCC_-_AAGGUCAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		14: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		7: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 14 →
3 3 4 ↑
4 5 6 ↑
5 6 11 →
6 9 10 ↑
7 10 11 ↑
8 12 13 ↑
9 13 14 ↑
10 14 15 ↑
11 15 16 ↑
12 17 18 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 18 Watson-Crick/Watson-Crick cis
2 2 15 Watson-Crick/Watson-Crick cis
3 4 13 Watson-Crick/Watson-Crick cis y
4 5 12 Watson-Crick/Watson-Crick trans y
5 7 10 O2'/Bifurcated ?
6 7 11 O2'/Bifurcated ?
7 8 9 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters