Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-3-Internal Loop pdb2d3o10.n2597-2639
Source: [PDB-id:chain] 2d3o:0 (&rarr PDB)
Source: Information STRUCTURE OF RIBOSOME BINDING DOMAIN OF THE TRIGGER FACTOR ON THE 50S RIBOSOMAL SUBUNIT FROM D. RADIODURANS
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.35 ANGSTROMS.
Position (2600, 2636), (2604, 2632)
Primary structure ('_': anchors) _CUC_-_GUA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		2: C4'-exo, 3: C4'-exo, 4: C4'-exo, 5: C2'-exo, 8: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		4: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 6 7 ↑
3 8 9 ↑
4 9 10 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 10 Watson-Crick/Watson-Crick cis y
2 2 8 O2'/Bifurcated ?
3 2 9 Hoogsteen/Sugar trans y
4 3 5 Bifurcated/O2' ?
5 3 7 Bifurcated/O2' ?
6 5 6 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters